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All software provided on this website comes without any warranty, use it at your own risk.
Download and documentation
Please find the latest version of the code and documentation on our github page :
You can either git clone the repository using the following command:
git clone --recursive --depth 1 https://github.com/grenaud/schmutzi.git
or click on the schmutzi.tar.gz to download schmutzi as a zipped tar file.
Dataset for testing
Empirical data
The mapped and sorted BAM files for B9687 and B9688 are found here:
B9687.mapped.bam
B9687.mapped.bam.bai
B9688.mapped.bam
B9688.mapped.bam.bai
Simulated data
The mapped and sorted BAM files for endogenous and contaminant are found here:
Denisova contaminant double strand
Denisova endogenous double strand
Denisova contaminant single strand
Denisova endogenous single strand
Early modern human contaminant double strand
Early modern human endogenous double strand
Early modern human contaminant single strand
Early modern human endogenous single strand
Neanderthal contaminant double strand
Neanderthal endogenous double strand
Neanderthal contaminant single strand
Neanderthal endogenous single strand
Contact
Email either:
gabriel_renaud [at sign here] eva.mpg.de
or
kelso [at sign here] eva.mpg.de
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