So for some context, my work is not directly about evolution, but about how amino acid sequence determines function in the context of unfolded/disordered proteins.
That said, here are several at least semi-relevant papers that have influenced my thinking on a bunch of things (no particular order).
[1] Wheeler, L.C., Lim, S.A., Marqusee, S., and Harms, M.J. (2016). The thermostability and specificity of ancient proteins. Curr. Opin. Struct. Biol. 38, 37–43. (Probably paywalled but available on the Harms' lab website - https://harmslab.uoregon.edu/publications/. Mike's work on thinking about the biophysics of evolution is in general super cool. Similarly work by Adrian Serohijos is really interesting, although I am in general less familiar with it http://www.serohijoslab.org/publications.html)
[2] Tikhonov, M. (2016). Community-level cohesion without cooperation. Elife 5. (Open Access, really cool, and publishing a single-author original paper in a top journal in this day-and-age is incredibly impressive).
[3] Riback, J.A., Katanski, C.D., Kear-Scott, J.L., Pilipenko, E.V., Rojek, A.E., Sosnick, T.R., and Drummond, D.A. (2017). Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response. Cell 168, 1028–1040.e19. (Paywalled, but IMO a HUGELY important study for thinking about 'aggregation' in the context of cellular fitness)
[4] Chakrabortee, S., Byers, J.S., Jones, S., Garcia, D.M., Bhullar, B., Chang, A., She, R., Lee, L., Fremin, B., Lindquist, S., et al. (2016). Intrinsically Disordered Proteins Drive Emergence and Inheritance of Biological Traits. Cell 167, 369–381.e12. (Paywalled, but potentially one of the most important discoveries in cellular adaptation in decades. More work to be done though!)
[5] Halabi, N., Rivoire, O., Leibler, S., and Ranganathan, R. (2009). Protein sectors: evolutionary units of three-dimensional structure. Cell 138, 774–786. (Paywalled, but super important for thinking about the relationship between local structural coupling and evolutionary behaviour. In general, everything Rama puts out is just gold.)
That said, here are several at least semi-relevant papers that have influenced my thinking on a bunch of things (no particular order).
[1] Wheeler, L.C., Lim, S.A., Marqusee, S., and Harms, M.J. (2016). The thermostability and specificity of ancient proteins. Curr. Opin. Struct. Biol. 38, 37–43. (Probably paywalled but available on the Harms' lab website - https://harmslab.uoregon.edu/publications/. Mike's work on thinking about the biophysics of evolution is in general super cool. Similarly work by Adrian Serohijos is really interesting, although I am in general less familiar with it http://www.serohijoslab.org/publications.html)
[2] Tikhonov, M. (2016). Community-level cohesion without cooperation. Elife 5. (Open Access, really cool, and publishing a single-author original paper in a top journal in this day-and-age is incredibly impressive).
[3] Riback, J.A., Katanski, C.D., Kear-Scott, J.L., Pilipenko, E.V., Rojek, A.E., Sosnick, T.R., and Drummond, D.A. (2017). Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response. Cell 168, 1028–1040.e19. (Paywalled, but IMO a HUGELY important study for thinking about 'aggregation' in the context of cellular fitness)
[4] Chakrabortee, S., Byers, J.S., Jones, S., Garcia, D.M., Bhullar, B., Chang, A., She, R., Lee, L., Fremin, B., Lindquist, S., et al. (2016). Intrinsically Disordered Proteins Drive Emergence and Inheritance of Biological Traits. Cell 167, 369–381.e12. (Paywalled, but potentially one of the most important discoveries in cellular adaptation in decades. More work to be done though!)
[5] Halabi, N., Rivoire, O., Leibler, S., and Ranganathan, R. (2009). Protein sectors: evolutionary units of three-dimensional structure. Cell 138, 774–786. (Paywalled, but super important for thinking about the relationship between local structural coupling and evolutionary behaviour. In general, everything Rama puts out is just gold.)