You make a great point. It probably took me a day to figure out what "karma" was, upvotes, etc. I don't think I sent a single upvote for weeks since I didn't know how important they were/weren't.
I'm pretty new here (about a week I think). While the voting/karma system isn't readily apparent, like you, I figured it out about a day after registering. I think the FAQ could possibly benefit from a more thorough explanation, but I do think people figure it out eventually once they start participating.
I registered yesterday and came to know about it immediately about what he up arrows are. Anyone who's familiar with discussion forums can get it in a while I guess.
But, sure, I think HN should have given a note of this.
Using Alt text is a good idea to keep the space clean and unintuitive.