Every person I know who has talked about public transport says the other people (especially bums napping and skeevy people) are the big thing that limits the amount of traveling they do on rails and buses. Reach and timing take up the next two slots.
I can definitely feel 'trapped' when people invade my personal space, especially if they smell or have a cough. Those experiences are horrible for the extended amounts of time required for a commute. I still ride, but driving really isn't an option.
Sometimes I wonder why public transport doesn't raise the prices during rush hour to create an equilibrium where the trains don't become sardine cans. I guess economically and somewhat ethically it might be harmful.
I pay $10 to get to work and back in rush hour. Parking is $12 for the day, plus gas and wear and tear. I would gladly pay some extra cash if it made the trains emptier, cleaner, and more reliable.